An Evolutionary Model for Protein-Coding Regions with Conserved RNA Structure
نویسندگان
چکیده
منابع مشابه
An evolutionary model for protein-coding regions with conserved RNA structure.
Here we present a model of nucleotide substitution in protein-coding regions that also encode the formation of conserved RNA structures. In such regions, apparent evolutionary context dependencies exist, both between nucleotides occupying the same codon and between nucleotides forming a base pair in the RNA structure. The overlap of these fundamental dependencies is sufficient to cause "contagi...
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The self-complementary subset T0 = X0 [symbol: see text] ¿AAA, TTT¿ with X0 = ¿AAC, AAT, ACC, ATC, ATT, CAG, CTC, CTG, GAA, GAC, GAG, GAT, GCC, GGC, GGT, GTA, GTC, GTT, TAC, TTC¿ of 22 trinucleotides has a preferential occurrence in the frame 0 (reading frame established by the ATG start trinucleotide) of protein (coding) genes of both prokaryotes and eukaryotes. The subsets T1 = X1 [symbol: se...
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ژورنال
عنوان ژورنال: Molecular Biology and Evolution
سال: 2004
ISSN: 1537-1719,0737-4038
DOI: 10.1093/molbev/msh199